PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_11481.1_g00001.1
Common NameARF8
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ARF
Protein Properties Length: 889aa    MW: 98553.9 Da    PI: 6.5801
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_11481.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.61.4e-24128229199
                              EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                              f+k+lt sd++++g +++p++ ae+       +++++++ +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD v
  Sme2.5_11481.1_g00001.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldySQQPPCQ-ELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAV 212
                              99*****************************97677775.9********************************************* PP

                              EEEE-SSSEE..EEEEE-S CS
                       B3  81 vFkldgrsefelvvkvfrk 99 
                              +F   ++++ +l+++++r+
  Sme2.5_11481.1_g00001.1 213 IFI--WNENNQLLLGIRRA 229
                              ***..7888889****997 PP

2Auxin_resp120.99.6e-40254337183
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                              aahaa+t+s F+++YnPras+seFv++++k+ ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Sme2.5_11481.1_g00001.1 254 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYAKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 337
                              79*********************************9789******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-49113257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.1E-44121243IPR015300DNA-binding pseudobarrel domain
CDDcd100175.16E-23127228No hitNo description
SMARTSM010194.3E-25128230IPR003340B3 DNA binding domain
PfamPF023621.1E-22128229IPR003340B3 DNA binding domain
PROSITE profilePS5086313.042128230IPR003340B3 DNA binding domain
PfamPF065071.1E-34254337IPR010525Auxin response factor
PfamPF023091.4E-6746839IPR033389AUX/IAA domain
SuperFamilySSF542772.35E-6750829No hitNo description
PROSITE profilePS5174521.963755842IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 889 aa     Download sequence    Send to blast
MRVSSSGFNP QPEEGEKKCL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE  60
VDAHIPNYPG LPPQLICQLH NLTMHADVET DEVYAQMTLQ PLSPQEQKDV CLLPAELGIP  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYS QQPPCQELIA KDLHGNEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD AVIFIWNENN QLLLGIRRAN RPQTVMPSSV  240
LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYAKAVYH TRISVGMRFR  300
MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGDRQP RVSLWEIEPL  360
TTFPMYPSPF SLRLKRPWPS GLPSLTGFPN GDMAMNSPLS WLRGDMGDQG MQSLNFQGFG  420
VTPFMQPRMD ASLLGLQPDI LQTMAALDPS KLANQSLMQF QQSIPNSSAS LSQSQMLQPS  480
HSHQNLIQGF SENHLISQAQ MLQQQLQRRQ NFNDQQQLLQ PQLQQHQEVN SQFQHQQRTK  540
AISSLSQMAS VTQPHLSHLP VLSSTGSQQT FSDMLGTHVN SSSNSNMQSL LSSFSRDGAP  600
AVLNMHETHP LVSSSSSSKR IALESQLPSR VTPFVLSQPE NVIAPNTKVS DLSSLLPPFP  660
GRESFSDYKG AEDSQSNALY GFTDSLNILQ TGMSNMKGSS GDNGSLSIPY AISTFTSTVG  720
NEYPLNSDMT ASSCVDESGF LQSSENGDQA NQTNRIFVKV QKSGSFGRSL DISKFSSYHE  780
LRSELARMFG LEGLLEDPER SGWQLVIVDR ENDVLLLGDD PWQEFVNNVW YIKILSPYEV  840
QQMGKEGLDL PNGVRTQRLP GNVNGCDDYM NQKGSRNTMN GIPLGSLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1621635847388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5976280.0FJ597628.1 Solanum melongena ARF8 (ARF8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015082269.10.0PREDICTED: auxin response factor 6-like isoform X3
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLB9VRZ60.0B9VRZ6_SOLME; Auxin response factor
STRINGPGSC0003DMT4000411270.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6